Repeatmasker est.fasta

output

est.fasta.cat est.fasta.log est.fasta.masked > gives the output file removing the unwanted and redundant data est.fasta.out > gives where the changes had been made est.fasta.tbl

est.fasta.out

SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID

180 25.0 2.1 0.0 seq1165 373 420 (263) + L2b LINE/L2 3234 3282 (93) 1 180 25.0 2.1 0.0 seq1545 549 596 (16) + L2b LINE/L2 3234 3282 (93) 2 180 25.0 2.1 0.0 seq3921 473 520 (48) + L2b LINE/L2 3234 3282 (93) 3 180 25.0 2.1 0.0 seq5025 181 228 (350) + L2b LINE/L2 3234 3282 (93) 4 180 25.0 2.1 0.0 seq5225 149 196 (531) + L2b LINE/L2 3234 3282 (93) 5 180 25.0 2.1 0.0 seq5514 431 478 (123) + L2b LINE/L2 3234 3282 (93) 6 180 25.0 2.1 0.0 seq5573 359 406 (177) + L2b LINE/L2 3234 3282 (93) 7 180 25.0 2.1 0.0 seq7881 289 336 (296) + L2b LINE/L2 3234 3282 (93) 8 180 25.0 2.1 0.0 seq9083 218 265 (302) + L2b LINE/L2 3234 3282 (93) 9

est.fasta.masked

seq1 CAAAGATTAGCTCAACCCCACCCGTGCAGCAGTGGCCAGGAATCCACCAG TCGCTTTAAATATGCACTACACGCGTTATCGTTGGCGGGGATCCCGGGGG ATGATCCATTGGCCTTGATACGGGCCACAACCACTGACACGCCCCACAAG CGAGTTTGGTTCACTGGGGCGAGCTGAAGGTTAGGTCTATCTATTGCGTA GCCGAAAAAGTCATCACCAGTAACTATGCCGCTCTCCTTGCCCTTTGCCA TGTGGTAGCTACGTCCTCCTCTATTGCACGTAACCCGGTTCAAAACCACG AATCGTATCACTTTGCTTCGAAAAACCACTTTGATCCAGATACAAATTAA ACTGCGATCCGAGCTTACCACCAAATCCGGGAGCATAAGCTGAAAGTGCA GGAGAGGCAGAGCTGGCGGTGGCCCTTCCACCTCCTTTTATCGTAACACG ATCGGCACGTCGGGCACTTTCGGGAAGGGCTGCCACACGAAAAGTCTTTT ATAACTACGAGC seq2 CCACGCATTATGTAAAAATTACCGACGTGGAGCTTCGTGCCGCCGGATTG TAAGAATAGCTCGTTGGAGATTACCTGAGTTGGTTGTTCTTTGTGTGTCA ATCCATCTCGCCCTGACGACGGGGGCAAACATAAAAGTCCGATAACCCCG AATTCACCTGGAATCATGGACAACCCGGACATTCCTACTTGGAAATCAGA TCAGAGTTCGCTCGGATCAGCGACTGTTTGCCCGATAACGCGGGACAGGC ATGGTTTAAAAAGTTCCGTTTTTTGTGCAAATTTCAAGACAATGCGTCTA ACCGTAGCCTCGAAGGGCTACTTATCGGCTCGCCGGTTATGGGCGGTGAT TTAAGTTAACGCGTTAGTTTGTAGAGCAGACACGTCCCTGTACCCATCGA AGAGTTATCTGTGACTATACCCAATATAGTTCACTTAACTACTTATACGT CCCCTGACAACATATGATCGAAGATAGAACGTTCGGCTATAGGCTATTAG AGGCGAGTTGTCTCGAGCACACTTATTAATAAATGTCC seq3 TGCGCACGCGAACGCCCCAGCCTAACGTCGGAAATAAGGGGCCTCTAAAT CCAAGTGCATTGTTCTCCGCTGGTGCGACACCGGACAAGGGTATGATGGA GATATGACACTTATACTAACGTATGCGTTCCTAACATTCCACCCCAGGCA ACGCGTACATGGAGGGCCCCGTTGCCTAAGTTGTATCCCCATGGGTGTGC CAACCAAAAGACCCAGCGCAAGAGGCACTGCACATTCGAGTTATTGAGGA CGTAGTTAACCGTAGACCCTTTCCATAAATATGCACCTGAGAAGAATCCT TATGGTCGGCCACGTTCAGTTCCTCATCGTAAACCGGCAAGACCCTATCG GGCTACAATTCAGATAACTGCGTAAATTGAATTCTAAGTCTGTTAATCCT CCTGATAACCGGACGTAGTCAGGTCGCTCAATCTATGCGGGTTGAAGGAC GCTCTACGGGCCCACCCCACGGAGATTGGGTCCTCGGATCGATCTTGGAT GTCGATACCAAGAAGTCGGATCAAACACGTCTACTACTGCCGGGGTTTTG CATCCCTAGCGAGCGGGCGGCCGTCGAACGCACTTCGCCCACCTTGATGA CCCCCCAACCCTTCAGAGGACCCGCCATGGTGAGCACAAGCAACAGAAGT TAGGGCGTGATTTGAAGAT seq4 GGTGACAAGCGGTCTAACGGAGCCTCTACGGGATGGGGATTTTCTGATCA AACTCTGCCAAGGAGTAGTATAGCACATGAGCTCAGTCGTAGGGAAGCAA AACAATCACGAGATCCCTCTATATTCTCACCTCCCGAAAGATCTGACCCC GCCAAGACAGAATATCAGATCCTGAAGATTTATCTCATCCTTAACAGCCA GGCCGTGGTTCACGTACGGATGACTTTTCGTTAGTGGCGGTATATCGTCC CTATGTAGGGGAGACGAGACACAAGTATGAGCAGACTTAGCACTTACATC GGGGACGTTATGGCAAGTGTGCCTGCCCAATGTTCGACTGGCTCCCATGG GAACTTATAGTTCTTCGGCTACAGACACGGTATATGCCACTCCCTAAAAA GCTTACAATGTTCAAGCGTAGTCTGTGCAAGGAGAAATGTGATATCATTC ATGCGAGGCCTCAATTTTTTTTAACAGAGCGGCGGGGCCGCTCGCCGGCC seq5 AGCTTTGATGGTAGCTGCGAGCCCATCGCCGGTCTAAGGGACTTGATGGA GGATCAACTCATCCCATTCGGCCTGGCTTGAGTCCTTCAGTCACTCATTC TCTTGGCCGCGGATAGGATGCACTTATAAACGACCCAAAAGGGCAGGAGT TTCAGCCCTAGGAGGGTTTCTGGGTTCACTGGCATTAGCACCGACTCTGG GCTTAATCCAGGTCCCACGGCTGTGCCGAGAGTCCCTTAGCAGGAGTTGG