• left out with one dependency..

  Nov 10, 2010

  installed all the java dependencies..

• got struck with installing biojava..

  Nov 9, 2010

  i installed it using the Readme file for the swarmapp but actually it need to be installed using maven…

• workit out !!!!!!

  Nov 8, 2010

  Missing:

  1) biojava:biojava:jar:1.6.1

• running pace new method

  Oct 29, 2010

  Step 1. generate datafile with n sequences

• installing Pace

  Oct 27, 2010

  Run the “make” command from the shell.

• parameters in pace

  Oct 27, 2010

  Dynamic Programming scores and their default values:

• Assembly of PaCE clusters using CAP3 :

  Oct 27, 2010

  This is a wrapper script for running CAP3 assembly on each of the PaCE cluster. This package does NOT include the “cap3” executable. If CAP3 is not available, it can be obtained by mailing Dr.Xiaoqiu Huang (xqhuang@cs.iastate.edu).

• Running cap3

  Oct 22, 2010

  after installing cap3

• Running the pace

  Oct 20, 2010

  • cd PaCE-pipeline/PaCE-clustering

• my first job on tera grid ( running repeatmasker)...

  Oct 19, 2010

  Repeatmasker est.fasta

Subscribe